acquifer.core

Class PlatePlane

Object

acquifer.core.Dataset

acquifer.core.PlatePlane

public class PlatePlane
extends Dataset

A PlatePlane represents a montage of individual IM images (ImagePlane) belonging to the same plate-montage.
The contained ImagePlane thus share the same subposition and CZT, but have different well coordinates.
They also reside in the same dataset.
A collection of PlatePlane with identical subpositions, can form a PlateSeries, ie a hyperstack of plate-montages for each CZT. The order of the individual ImagePlane in a PlatePlane does not have any importance.
PlatePlane are immutable.

Field Summary

Fields

Modifier and Type	Field and Description
static Comparator<PlatePlane>	SORT_CHANNEL
static Comparator<PlatePlane>	SORT_CZT Sort Planes following CZT order as expected for hyperstacks in ImageJ.
static Comparator<PlatePlane>	SORT_TIMEPOINT
static Comparator<PlatePlane>	SORT_Z

Fields inherited from class acquifer.core.Dataset

listImages

Constructor Summary

Constructors

Constructor and Description
PlatePlane(ImagePlane[] listImagePlanes)

Method Summary

Modifier and Type	Method and Description
int	getChannel() Return the channel associated to this PlatePlane.
int	getSubPosition() Return the subposition associated to this PlatePlane.
int	getTimepoint() Return the timepoint associated to this PlatePlane.
int	getZslice() Return the Z-slice index associated to this PlatePlane.
String	toString()

Methods inherited from class acquifer.core.Dataset

getDirectory, getDirectoryName, getDirectoryPath, getImagePlane, getListOfImagePlanes, getListOfImagePlanes, getNumberOfChannels, getNumberOfExistingImagePlanes, getNumberOfImageSeries, getNumberOfPlanesPerSeries, getNumberOfSubpositions, getNumberOfTimepoints, getNumberOfWells, getNumberOfZslices, getSetChannels, getSetPlateColumns, getSetPlateRows, getSetSubpositions, getSetTimepoints, getSetWells, getSetZ, getSortOrder, groupByImageSeries

Methods inherited from class Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SORT_TIMEPOINT

public static final Comparator<PlatePlane> SORT_TIMEPOINT

SORT_Z

public static final Comparator<PlatePlane> SORT_Z

SORT_CHANNEL

public static final Comparator<PlatePlane> SORT_CHANNEL

SORT_CZT

public static final Comparator<PlatePlane> SORT_CZT

Sort Planes following CZT order as expected for hyperstacks in ImageJ.
i.e with channels varying first then Z-slices and finally timepoints.

Constructor Detail

PlatePlane

public PlatePlane(ImagePlane[] listImagePlanes)

Method Detail

getSubPosition

public int getSubPosition()

Return the subposition associated to this PlatePlane.

getChannel

public int getChannel()

Return the channel associated to this PlatePlane.

getZslice

public int getZslice()

Return the Z-slice index associated to this PlatePlane.

getTimepoint

public int getTimepoint()

Return the timepoint associated to this PlatePlane.

toString

public String toString()

Overrides:

toString in class Dataset